DYOR
Binding Reagents
The concept of molecules recognising and binding to other molecules can be understood by considering the most common binding agent used commercially - Antibodies.
Antibodies (Ab) are produced naturally as a response to foreign substances (antigens). We all have the potential to recognise an unlimited set of foreign molecules. Though the general structure of all antibodies is very similar, a small region at the tip of the protein is extremely variable, allowing millions of antibodies with slightly different tip structures, or antigen-binding sites, to exist. This region is known as the hypervariable region. Each of these variants can bind to a different antigen. This enormous diversity of antibody antigen-binding fragments allows the immune system to recognize an equally wide variety of antigens
Due to their ability to bind to other molecules with high specificity Abs have been used in numerous applications including therapeutics and diagnostics. While there are over 500,000 different antibodies on the market, it has been reported that up to 75% have either not been validated, show a low level of validation or simply do not perform adequately in certain applications

Affimers
Affimers share similarities with antibodies in that they have a constant region and a variable region.
The constant region is based on a naturally occurring protein called Stefin A or a protein from plants called Cystatin A. The company suggest that the first is suited to therapeutics whereas the second is intended for diagnostics.
The variable binding surfaces are obtained through two 9 amino acid loops which enables affimers with high-affinity and selectivity. By varying the sequence of amnio acids in these variable regions, a huge number of affimers are possible. By using genetic engineering techniques (phage display) a large number of potential affimers and their genetic code can be screened to select those which have the characteristics required. The genetic code is then inserted into E.coli which go onto to produce large amounts of the affimer.
